| LEHIGH SENIOR HIGH SCHOOL | Lehigh Acres | High | 09-12 | 2,476 | · |
| VETERANS PARK ACADEMY FOR THE ARTS | Lehigh Acres | Elementary | PK-08 | 2,133 | · |
| GATEWAY HIGH SCHOOL | Lehigh Acres | High | 09-12 | 1,981 | · |
| IDA S. BAKER HIGH SCHOOL | Cape Coral | High | 09-12 | 1,933 | · |
| SOUTH FORT MYERS HIGH SCHOOL | Fort Myers | High | 09-12 | 1,917 | · |
| FORT MYERS HIGH SCHOOL | Fort Myers | High | 09-12 | 1,902 | · |
| EAST LEE COUNTY HIGH SCHOOL | Lehigh Acres | High | 09-12 | 1,896 | · |
| CAPE CORAL HIGH SCHOOL | Cape Coral | High | 09-12 | 1,887 | · |
| RIVERDALE HIGH SCHOOL | Fort Myers | High | 09-12 | 1,880 | · |
| NORTH FORT MYERS HIGH SCHOOL | North Fort Myers | High | 09-12 | 1,874 | · |
| MARINER HIGH SCHOOL | Cape Coral | High | 09-12 | 1,852 | · |
| DUNBAR HIGH SCHOOL | Fort Myers | High | 09-12 | 1,802 | · |
| ISLAND COAST HIGH SCHOOL | Cape Coral | High | 09-12 | 1,653 | · |
| CYPRESS LAKE HIGH SCHOOL | Fort Myers | High | 09-12 | 1,580 | · |
| OAK HAMMOCK MIDDLE SCHOOL | Fort Myers | Middle | 06-08 | 1,563 | · |
| BONITA SPRINGS HIGH SCHOOL | Bonita Springs | High | 09-12 | 1,543 | · |
| ESTERO HIGH SCHOOL | Estero | High | 09-12 | 1,433 | · |
| HARNS MARSH MIDDLE SCHOOL | Lehigh Acres | Middle | 06-08 | 1,422 | · |
| LEHIGH ACRES MIDDLE SCHOOL | Lehigh Acres | Middle | 06-08 | 1,356 | · |
| VARSITY LAKES MIDDLE SCHOOL | Lehigh Acres | Middle | 06-08 | 1,307 | · |
| BONITA SPRINGS CHARTER SCHOOL | Bonita Springs | Elementary | KG-08 | 1,302 | · |
| SUNSHINE ELEMENTARY SCHOOL | Lehigh Acres | Elementary | PK-05 | 1,301 | · |
| GATEWAY CHARTER ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-04 | 1,245 | · |
| THE ALVA SCHOOL | Alva | Elementary | PK-08 | 1,237 | · |
| GULF ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 1,231 | · |
| MIRROR LAKES ELEMENTARY SCHOOL | Lehigh Acres | Elementary | PK-05 | 1,228 | · |
| LEHIGH ELEMENTARY SCHOOL | Lehigh Acres | Elementary | PK-05 | 1,226 | · |
| LEXINGTON MIDDLE SCHOOL | Fort Myers | Middle | 06-08 | 1,138 | · |
| TREELINE ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 1,135 | · |
| CHALLENGER MIDDLE SCHOOL | Cape Coral | Middle | 06-08 | 1,124 | · |
| HEIGHTS ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 1,109 | · |
| NORTH FORT MYERS ACADEMY FOR THE ARTS | North Fort Myers | Elementary | PK-08 | 1,106 | · |
| TORTUGA PRESERVE ELEMENTARY SCHOOL | Lehigh Acres | Elementary | PK-05 | 1,104 | · |
| THREE OAKS MIDDLE SCHOOL | Fort Myers | Middle | 06-08 | 1,099 | · |
| PINEWOODS ELEMENTARY SCHOOL | Estero | Elementary | PK-05 | 1,089 | · |
| DIPLOMAT ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 1,069 | · |
| GATEWAY CHARTER INTERMEDIATE SCHOOL | Ft Myers | Middle | 05-08 | 1,036 | · |
| PAUL LAURENCE DUNBAR MIDDLE SCHOOL | Fort Myers | Middle | 06-08 | 1,007 | · |
| RIVER HALL ELEMENTARY SCHOOL | Alva | Elementary | PK-05 | 1,005 | · |
| MARINER MIDDLE SCHOOL | Cape Coral | Middle | 06-08 | 1,001 | · |
| THREE OAKS ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 1,000 | · |
| SKYLINE ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 990 | · |
| HARNS MARSH ELEMENTARY SCHOOL | Lehigh Acres | Elementary | PK-05 | 989 | · |
| TRAFALGAR MIDDLE SCHOOL | Cape Coral | Middle | 06-08 | 986 | · |
| CALOOSA ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 972 | · |
| CALOOSA MIDDLE SCHOOL | Cape Coral | Middle | 06-08 | 935 | · |
| PELICAN ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 917 | · |
| DIPLOMAT MIDDLE SCHOOL | Cape Coral | Middle | 06-08 | 912 | · |
| TRAFALGAR ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 911 | · |
| ALLEN PARK ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 900 | · |
| OASIS CHARTER ELEMENTARY SCHOOL-SOUTH | Cape Coral | Elementary | KG-05 | 873 | · |
| G. WEAVER HIPPS ELEMENTARY SCHOOL | Lehigh Acres | Elementary | PK-05 | 863 | · |
| RAYMA C. PAGE ELEMENTARY SCHOOL | Ft Myers | Elementary | PK-06 | 863 | · |
| VILLAS ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 855 | · |
| SIX MILE CHARTER ACADEMY | Fort Myers | Elementary | PK-08 | 842 | · |
| GATEWAY ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 840 | · |
| OASIS CHARTER MIDDLE SCHOOL | Cape Coral | Middle | 06-08 | 839 | · |
| GULF MIDDLE SCHOOL | Cape Coral | Middle | 06-08 | 812 | · |
| BONITA SPRINGS MIDDLE CENTER FOR THE ARTS | Bonita Springs | Middle | 06-08 | 807 | · |
| MID CAPE GLOBAL ACADEMY | Cape Coral | Elementary | PK-08 | 806 | · |
| LEE COUNTY VIRTUAL FRANCHISE | Fort Myers | Other | PK-12 | 801 | · |
| TROPIC ISLES ELEMENTARY SCHOOL | North Fort Myers | Elementary | PK-05 | 800 | · |
| MANATEE ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 794 | · |
| ORANGE RIVER ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 788 | · |
| HANCOCK CREEK ELEMENTARY SCHOOL | North Fort Myers | Elementary | PK-05 | 786 | · |
| CYPRESS LAKE MIDDLE SCHOOL | Fort Myers | Middle | 06-08 | 781 | · |
| PATRIOT ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 775 | · |
| OASIS ELEMENTARY CHARTER SCHOOL-NORTH | Cape Coral | Elementary | KG-05 | 770 | · |
| OASIS CHARTER HIGH SCHOOL | Cape Coral | High | 09-12 | 764 | · |
| COLONIAL ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 760 | · |
| CAPE ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 759 | · |
| RAY V. POTTORF ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 753 | · |
| TANGLEWOOD ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 724 | · |
| HECTOR A. CAFFERATA JR ELEMENTARY SCHOOL | Cape Coral | Elementary | PK-05 | 723 | · |
| FORT MYERS MIDDLE ACADEMY | Fort Myers | Middle | 06-08 | 687 | · |
| SAN CARLOS PARK ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 655 | · |
| ORANGEWOOD ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 615 | · |
| GATEWAY CHARTER HIGH SCHOOL | Fort Myers | High | 09-12 | 604 | · |
| BAYSHORE ELEMENTARY SCHOOL | North Ft Myers | Elementary | PK-05 | 603 | · |
| SPRING CREEK ELEMENTARY SCHOOL | Bonita Springs | Elementary | PK-05 | 594 | · |
| OAK CREEK CHARTER SCHOOL OF BONITA SPRINGS | Bonita Springs | Elementary | KG-08 | 579 | · |
| BONITA SPRINGS ELEMENTARY SCHOOL | Bonita Springs | Elementary | PK-05 | 546 | · |
| DR CARRIE D ROBINSON LITTLETON ELEMENTARY SCHOOL | North Fort Myers | Elementary | PK-05 | 533 | · |
| TICE ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 514 | · |
| EDGEWOOD ACADEMY | Fort Myers | Elementary | PK-05 | 480 | · |
| JAMES STEPHENS ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 454 | · |
| J. COLIN ENGLISH ELEMENTARY SCHOOL | North Fort Myers | Elementary | PK-05 | 438 | · |
| FLORIDA SOUTHWESTERN COLLEGIATE HIGH SCHOOL | Ft Myers | High | 09-12 | 410 | · |
| ATHENIAN ACADEMY CHARTER SCHOOL | Fort Myers | Elementary | KG-08 | 405 | · |
| EDISON PARK CREATIVE AND EXPRESSIVE ARTS SCHOOL | Fort Myers | Elementary | PK-05 | 402 | · |
| FRANKLIN PARK ELEMENTARY SCHOOL | Fort Myers | Elementary | PK-05 | 374 | · |
| ISLAND PARK HIGH SCHOOL | Fort Myers | High | 09-12 | 316 | · |
| NORTH NICHOLAS HIGH SCHOOL | Cape Coral | High | 09-12 | 315 | · |
| CORONADO HIGH SCHOOL | Ft Myers | High | 07-12 | 298 | · |
| PALM ACRES CHARTER HIGH SCHOOL | Lehigh Acres | High | 09-12 | 293 | · |
| EARLY CHILDHOOD LEARNING SERVICES | Fort Myers | Prekindergarten | PK-PK | 290 | · |
| THE SANIBEL SCHOOL | Sanibel | Elementary | PK-08 | 289 | · |
| DONNA J. BEASLEY TECHNICAL ACADEMY | Lehigh Acres | High | 09-12 | 271 | · |
| PINE ISLAND ELEMENTARY SCHOOL | Bokeelia | Elementary | PK-05 | 236 | · |
| HARLEM HEIGHTS COMMUNITY CHARTER SCHOOL | Fort Myers | Elementary | KG-05 | 176 | · |
| HERITAGE CHARTER ACADEMY OF CAPE CORAL | Cape Coral | Elementary | KG-08 | 164 | · |
| SUCCESS ACADEMY | Fort Myers | High | 06-12 | 138 | · |
| CITY OF PALMS CHARTER HIGH SCHOOL | Fort Myers | High | 09-12 | 133 | · |
| ROYAL PALM EXCEPTIONAL SCHOOL CENTER | Fort Myers | Other | PK-12 | 131 | · |
| NORTHERN PALMS CHARTER HIGH SCHOOL | North Fort Myers | High | 09-12 | 114 | · |
| FORT MYERS BEACH ELEMENTARY SCHOOL | Fort Myers Beach | Elementary | PK-05 | 80 | · |
| COUNTY WIDE EXCEPTIONAL CHILD PROGRAMS | Fort Myers | Other | PK-12 | 79 | · |
| THE ISLAND SCHOOL | Boca Grande | Elementary | KG-05 | 66 | · |
| BUCKINGHAM EXCEPTIONAL STUDENT CENTER | Fort Myers | Other | PK-12 | 63 | · |
| PACE SCHOOL FOR GIRLS | Ft Myers | High | 06-12 | 60 | · |
| YOUNG PARENT EDUCATION PROGRAM | Fort Myers | High | 06-12 | 54 | · |
| SOUTHWEST FLORIDA JUVENILE DETENTION CENTER | Fort Myers | High | 06-12 | 16 | · |
| SW FL ADDICTION SERVICES-THE VINCE SMITH CENTER | Ft Myers | High | 06-12 | 4 | · |
| LEE COUNTY JAIL | Fort Myers | High | 07-12 | 3 | · |
| CAPE CORAL TECHNICAL COLLEGE | Cape Coral | High | 09-12 | 0 | · |
| FORT MYERS ACADEMY | Fort Myers | High | 06-12 | 0 | · |
| FORT MYERS TECHNICAL COLLEGE | Fort Myers | High | 09-12 | 0 | · |
| LEE COUNTY ACCELERATION ACADEMIES | Fort Myers | High | 08-12 | 0 | · |
| LEE COUNTY VIRTUAL INSTRUCTION PROGRAM (DISTRICT PROVIDED) | Fort Myers | Elementary | KG-05 | 0 | · |
| LEE VIRTUAL INSTRUCTION PROGRAM | Fort Myers | Other | KG-12 | 0 | · |
| PALM RIVER CHARTER HIGH SCHOOL | Fort Meyers | High | 09-12 | 0 | · |
| AMANECER ELEMENTARY SCHOOL | Lehigh Acres | Not reported | M -M | · | · |
| EAST ZONE MIDDLE SCHOOL QQ | Lehigh Acres | Not reported | M -M | · | · |